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(\u003ca href=\"https://github.com/ChrisRackauckas-Claude\"\u003e\u003ccode\u003e@​ChrisRackauckas-Claude\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eBump actions/upload-artifact from 5 to 6 (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1348\"\u003e#1348\u003c/a\u003e) (\u003ca href=\"https://github.com/dependabot\"\u003e\u003ccode\u003e@​dependabot\u003c/code\u003e\u003c/a\u003e[bot])\u003c/li\u003e\n\u003cli\u003eVersion 16 jump fixes (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1354\"\u003e#1354\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eEnsure docs build on v16 (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1356\"\u003e#1356\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eUnify System creation during conversion (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1357\"\u003e#1357\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eremove performance benchmark tests (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1358\"\u003e#1358\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003einit (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1359\"\u003e#1359\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eMinor: slight code reorder and error message addition (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1360\"\u003e#1360\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eDesignate stoich ps as int in dsl (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1361\"\u003e#1361\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eReduce \u003ccode\u003esymmap_to_varmap\u003c/code\u003e usage (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1362\"\u003e#1362\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003esupport user provided brownians and jumps for ReactionSystems (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1363\"\u003e#1363\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eCI updates (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1365\"\u003e#1365\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eensure that serialization throws warning for new types (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1366\"\u003e#1366\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eSupport \u003ccode\u003e@brownians\u003c/code\u003e in DSL (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1367\"\u003e#1367\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eTry initialization fix for Julia 1.10 with HC and MTKBase (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1368\"\u003e#1368\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003etry using new Pre (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1369\"\u003e#1369\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eHybrid SDE plus jump support in ReactionSystem (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1370\"\u003e#1370\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eSplit out events from constraint equations docs (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1371\"\u003e#1371\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eAuto jump vars discovery and improve concrete typing (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1372\"\u003e#1372\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003edrop unneeded accessor (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1374\"\u003e#1374\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eConstructor cleanup (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1375\"\u003e#1375\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003efix isdetailedbalanced tol issue (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1376\"\u003e#1376\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eVersion 16 new (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1377\"\u003e#1377\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eAdd save_positions tests for ConstantRateJump and SDE+Jump systems (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1379\"\u003e#1379\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eHybrid tests remake (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1380\"\u003e#1380\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003emerge symmap_to_varmap into master (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1381\"\u003e#1381\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eAdd remake tests for hybrid problems and update JumpProcesses compat (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1382\"\u003e#1382\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eJump int promotion fix (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1383\"\u003e#1383\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003erename conversion functions (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1384\"\u003e#1384\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eExplictImports, ss_ode_model, and update HISTORY (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1385\"\u003e#1385\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eadd Poisonnians support (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1386\"\u003e#1386\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eFix spatial tests (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1387\"\u003e#1387\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eAdd \u003ca href=\"https://github.com/poissonians\"\u003e\u003ccode\u003e@​poissonians\u003c/code\u003e\u003c/a\u003e DSL option for \u003ca href=\"https://github.com/reaction\"\u003e\u003ccode\u003e@​reaction\u003c/code\u003e\u003c/a\u003e_network and \u003ca href=\"https://github.com/network\"\u003e\u003ccode\u003e@​network\u003c/code\u003e\u003c/a\u003e_component (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1388\"\u003e#1388\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eBk/improve error for non integer stoichiometry (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1389\"\u003e#1389\u003c/a\u003e) (\u003ca href=\"https://github.com/calebjubal\"\u003e\u003ccode\u003e@​calebjubal\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eOverhaul Catalyst's unit validation system (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1390\"\u003e#1390\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eDoc updates: README, Home, FAW, and API (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1391\"\u003e#1391\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eUpdate simulation doc section for v16 (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1392\"\u003e#1392\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eUpdate Catalyst Introduction doc pages (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1393\"\u003e#1393\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eRemove dead deps (Requires, DynamicPolynomials), clean up extension checks (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1394\"\u003e#1394\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eFix deprecation warnings from ModelingToolkitBase (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1395\"\u003e#1395\u003c/a\u003e) (\u003ca href=\"https://github.com/ChrisRackauckas-Claude\"\u003e\u003ccode\u003e@​ChrisRackauckas-Claude\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eGraph array fixes and some dep cleanup (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1396\"\u003e#1396\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003c/ul\u003e\n\u003c!-- raw HTML omitted --\u003e\n\u003c/blockquote\u003e\n\u003cp\u003e... (truncated)\u003c/p\u003e\n\u003c/details\u003e\n\u003cdetails\u003e\n\u003csummary\u003eChangelog\u003c/summary\u003e\n\u003cp\u003e\u003cem\u003eSourced from \u003ca href=\"https://github.com/SciML/Catalyst.jl/blob/master/HISTORY.md\"\u003eCatalyst's changelog\u003c/a\u003e.\u003c/em\u003e\u003c/p\u003e\n\u003cblockquote\u003e\n\u003ch1\u003eBreaking updates and feature summaries across releases\u003c/h1\u003e\n\u003ch2\u003eCatalyst 16.0\u003c/h2\u003e\n\u003cp\u003eCatalyst 16 is a major release that transitions from ModelingToolkit (MT) v9 to\nModelingToolkitBase (the base for ModelingToolkit v11); introduces unified\nhybrid model support for mixed ODE/SDE/Jump systems; supports user-provided\ncoupled ODEs, SDEs, jump processes, and jump-diffusions; and modernizes the\nconversion and problem-creation API.\u003c/p\u003e\n\u003cp\u003ePlease also see the \u003ca href=\"https://github.com/SciML/ModelingToolkit.jl/blob/master/NEWS.md\"\u003eModelingToolkit\nNEWS.md\u003c/a\u003e for\nall the changes that have occurred in ModelingToolkit as part of v10 and v11,\nand which are now relevant for Catalyst users.\u003c/p\u003e\n\u003ch4\u003eBREAKING: ModelingToolkitBase replaces ModelingToolkit\u003c/h4\u003e\n\u003cul\u003e\n\u003cli\u003e\n\u003cp\u003e\u003cstrong\u003eCatalyst now depends on and re-exports \u003ccode\u003eModelingToolkitBase\u003c/code\u003e instead of\n\u003ccode\u003eModelingToolkit\u003c/code\u003e.\u003c/strong\u003e This ensures Catalyst remains fully MIT-licensed after\nthe library split that occurred in ModelingToolkit v11. ModelingToolkitBase\nprovides the core symbolic system infrastructure (types, accessors, problem\nconstruction) that Catalyst needs. With this update, Catalyst moves from\nModelingToolkit v9 to ModelingToolkitBase 1.12+ (part of ModelingToolkit v11).\u003c/p\u003e\n\u003cp\u003eMost commonly used functions (\u003ccode\u003eunknowns\u003c/code\u003e, \u003ccode\u003eparameters\u003c/code\u003e, \u003ccode\u003eequations\u003c/code\u003e,\n\u003ccode\u003e@mtkcompile\u003c/code\u003e, etc.) are available through ModelingToolkitBase. However, if\nyou relied on \u003ccode\u003estructural_simplify\u003c/code\u003e, now part of \u003ccode\u003emtkcompile\u003c/code\u003e, for\nreducing models with algebraic equations, you may need to explicitly load\nModelingToolkit to obtain equivalent levels of model reduction and optimization:\u003c/p\u003e\n\u003cpre lang=\"julia\"\u003e\u003ccode\u003eusing Catalyst\nusing ModelingToolkit  # only if you need MTK-specific features not in MTKBase\n\u003c/code\u003e\u003c/pre\u003e\n\u003cp\u003eThe version of \u003ccode\u003emtkcompile\u003c/code\u003e in ModelingToolkitBase is less feature filled than\nin ModelingToolkit, but please be aware that the latter version now loads\nAGPL-licensed libraries that may impose additional restrictions on your code.\u003c/p\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003ch4\u003eBREAKING: Conversion functions renamed\u003c/h4\u003e\n\u003cul\u003e\n\u003cli\u003e\n\u003cp\u003e\u003cstrong\u003e\u003ccode\u003econvert(ODESystem, rs)\u003c/code\u003e is replaced by \u003ccode\u003eode_model(rs)\u003c/code\u003e.\u003c/strong\u003e\u003c/p\u003e\n\u003c/li\u003e\n\u003cli\u003e\n\u003cp\u003e\u003cstrong\u003e\u003ccode\u003econvert(SDESystem, rs)\u003c/code\u003e is replaced by \u003ccode\u003esde_model(rs)\u003c/code\u003e.\u003c/strong\u003e\u003c/p\u003e\n\u003c/li\u003e\n\u003cli\u003e\n\u003cp\u003e\u003cstrong\u003e\u003ccode\u003econvert(JumpSystem, rs)\u003c/code\u003e is replaced by \u003ccode\u003ejump_model(rs)\u003c/code\u003e.\u003c/strong\u003e\u003c/p\u003e\n\u003c/li\u003e\n\u003cli\u003e\n\u003cp\u003e\u003cstrong\u003e\u003ccode\u003econvert(NonlinearSystem, rs)\u003c/code\u003e is replaced by \u003ccode\u003ess_ode_model(rs)\u003c/code\u003e.\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eThe old \u003ccode\u003eBase.convert\u003c/code\u003e methods have been removed since ModelingToolkit now has\none, unified, system type, \u003ccode\u003eSystem\u003c/code\u003e. The new functions accept the same keyword\narguments as before.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eBefore:\u003c/strong\u003e\u003c/p\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003c!-- raw HTML omitted --\u003e\n\u003c/blockquote\u003e\n\u003cp\u003e... (truncated)\u003c/p\u003e\n\u003c/details\u003e\n\u003cdetails\u003e\n\u003csummary\u003eCommits\u003c/summary\u003e\n\u003cul\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/bdc9eee80a26afd8968305d997afa75b4e49fb08\"\u003e\u003ccode\u003ebdc9eee\u003c/code\u003e\u003c/a\u003e Update Project.toml\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/f0c375244dcc4951b05805b740cb1f984d368a2f\"\u003e\u003ccode\u003ef0c3752\u003c/code\u003e\u003c/a\u003e Bump version from 16.0.0 to 16.0.1\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/38be9ab70c340af7023eaa6bb0e8c73c7775464b\"\u003e\u003ccode\u003e38be9ab\u003c/code\u003e\u003c/a\u003e Update Project.toml\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/67ed483443723d44788ee6255cbe49471f4f58b9\"\u003e\u003ccode\u003e67ed483\u003c/code\u003e\u003c/a\u003e Update project version to 16.0.0\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/d99b3ccf2165167b88a5650a32865880ec97c548\"\u003e\u003ccode\u003ed99b3cc\u003c/code\u003e\u003c/a\u003e Merge pull request \u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1432\"\u003e#1432\u003c/a\u003e from isaacsas/readme_updates\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/cbc199a8507051498a123eb4c88b5548193e46f3\"\u003e\u003ccode\u003ecbc199a\u003c/code\u003e\u003c/a\u003e ci: revert Test.yml and TestExtensions.yml to master\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/ba4b5d9b483f8c8bf58f777c8b569fcd4889870a\"\u003e\u003ccode\u003eba4b5d9\u003c/code\u003e\u003c/a\u003e Merge pull request \u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1434\"\u003e#1434\u003c/a\u003e from isaacsas/worktree-debug-lts-bifurcation\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/9366929ce0d6a3df2d66837fa1824f56d57a7443\"\u003e\u003ccode\u003e9366929\u003c/code\u003e\u003c/a\u003e fix: use Symbolics.get_variables! in conslaw_species for Julia 1.10 compat\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/2f9fc57139a757e3635d6ccfa1ca1a4df7fafc73\"\u003e\u003ccode\u003e2f9fc57\u003c/code\u003e\u003c/a\u003e Apply suggestion from \u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/2edd309342797e30379565d993376c2e121496bd\"\u003e\u003ccode\u003e2edd309\u003c/code\u003e\u003c/a\u003e debug: fix broken import and add constantdefs diagnostics for LTS\u003c/li\u003e\n\u003cli\u003eAdditional commits viewable in \u003ca href=\"https://github.com/SciML/Catalyst.jl/compare/v15.0.0...v16.0.0\"\u003ecompare view\u003c/a\u003e\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/details\u003e\n\u003cbr /\u003e\n\n\nDependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`.\n\n[//]: # (dependabot-automerge-start)\n[//]: # (dependabot-automerge-end)\n\n---\n\n\u003cdetails\u003e\n\u003csummary\u003eDependabot commands and options\u003c/summary\u003e\n\u003cbr /\u003e\n\nYou can trigger Dependabot actions by commenting on this PR:\n- `@dependabot rebase` will rebase this PR\n- `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it\n- `@dependabot show \u003cdependency name\u003e ignore conditions` will show all of the ignore conditions of the specified dependency\n- `@dependabot ignore \u003cdependency name\u003e major version` will close this group update PR and stop Dependabot creating any more for the specific dependency's major version (unless you unignore this specific dependency's major version or upgrade to it yourself)\n- `@dependabot ignore \u003cdependency name\u003e minor version` will close this group update PR and stop Dependabot creating any more for the specific dependency's minor version (unless you unignore this specific dependency's minor version or upgrade to it yourself)\n- `@dependabot ignore \u003cdependency name\u003e` will close this group update PR and stop Dependabot creating any more for the specific dependency (unless you unignore this specific dependency or upgrade to it yourself)\n- `@dependabot unignore \u003cdependency name\u003e` will remove all of the ignore conditions of the specified dependency\n- `@dependabot unignore \u003cdependency name\u003e \u003cignore condition\u003e` will remove the ignore condition of the specified dependency and ignore conditions\n\n\n\u003c/details\u003e","html_url":"https://github.com/SciML/FiniteStateProjection.jl/pull/39","url":"https://dependabot.ecosyste.ms/api/v1/hosts/GitHub/repositories/SciML%2FFiniteStateProjection.jl/issues/39","packages_url":"https://dependabot.ecosyste.ms/api/v1/issues/39/packages"}],"issue_packages":[{"old_version":"15","new_version":"15, 16.0","update_type":null,"path":"the all-julia-packages group across 1 directory","pr_created_at":"2026-03-09T10:38:06.000Z","version_change":"15 → 15, 16.0","issue":{"uuid":"4044792195","node_id":"PR_kwDOFVnEWc7JCCzf","number":39,"state":"open","title":"Update Catalyst requirement from 15 to 15, 16.0 in the all-julia-packages group across 1 directory","user":"dependabot[bot]","labels":["dependencies","julia"],"assignees":[],"locked":false,"comments_count":3,"pull_request":true,"closed_at":null,"author_association":null,"state_reason":null,"created_at":"2026-03-09T10:38:06.000Z","updated_at":"2026-03-17T22:19:39.000Z","time_to_close":null,"merged_at":null,"merged_by":null,"closed_by":null,"dependency_metadata":{"prefix":"Update","packages":[{"name":"Catalyst","old_version":"15","new_version":"15, 16.0","repository_url":"https://github.com/SciML/Catalyst.jl"}],"path":"the all-julia-packages group across 1 directory","ecosystem":"julia"},"body":"Updates the requirements on [Catalyst](https://github.com/SciML/Catalyst.jl) to permit the latest version.\nUpdates `Catalyst` to 16.0.0\n\u003cdetails\u003e\n\u003csummary\u003eRelease notes\u003c/summary\u003e\n\u003cp\u003e\u003cem\u003eSourced from \u003ca href=\"https://github.com/SciML/Catalyst.jl/releases\"\u003eCatalyst's releases\u003c/a\u003e.\u003c/em\u003e\u003c/p\u003e\n\u003cblockquote\u003e\n\u003ch2\u003ev16.0.0\u003c/h2\u003e\n\u003ch2\u003eCatalyst v16.0.0\u003c/h2\u003e\n\u003cp\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/compare/v15.0.11...v16.0.0\"\u003eDiff since v15.0.11\u003c/a\u003e\u003c/p\u003e\n\u003cp\u003eSee HISTORY.md for breaking changes.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eMerged pull requests:\u003c/strong\u003e\u003c/p\u003e\n\u003cul\u003e\n\u003cli\u003e[WIP] v16 changes to get tests passing (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1322\"\u003e#1322\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eAdd Julia ecosystem to Dependabot configuration (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1346\"\u003e#1346\u003c/a\u003e) (\u003ca href=\"https://github.com/ChrisRackauckas-Claude\"\u003e\u003ccode\u003e@​ChrisRackauckas-Claude\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eBump actions/upload-artifact from 5 to 6 (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1348\"\u003e#1348\u003c/a\u003e) (\u003ca href=\"https://github.com/dependabot\"\u003e\u003ccode\u003e@​dependabot\u003c/code\u003e\u003c/a\u003e[bot])\u003c/li\u003e\n\u003cli\u003eVersion 16 jump fixes (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1354\"\u003e#1354\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eEnsure docs build on v16 (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1356\"\u003e#1356\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eUnify System creation during conversion (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1357\"\u003e#1357\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eremove performance benchmark tests (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1358\"\u003e#1358\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003einit (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1359\"\u003e#1359\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eMinor: slight code reorder and error message addition (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1360\"\u003e#1360\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eDesignate stoich ps as int in dsl (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1361\"\u003e#1361\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eReduce \u003ccode\u003esymmap_to_varmap\u003c/code\u003e usage (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1362\"\u003e#1362\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003esupport user provided brownians and jumps for ReactionSystems (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1363\"\u003e#1363\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eCI updates (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1365\"\u003e#1365\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eensure that serialization throws warning for new types (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1366\"\u003e#1366\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eSupport \u003ccode\u003e@brownians\u003c/code\u003e in DSL (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1367\"\u003e#1367\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eTry initialization fix for Julia 1.10 with HC and MTKBase (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1368\"\u003e#1368\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003etry using new Pre (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1369\"\u003e#1369\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eHybrid SDE plus jump support in ReactionSystem (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1370\"\u003e#1370\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eSplit out events from constraint equations docs (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1371\"\u003e#1371\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eAuto jump vars discovery and improve concrete typing (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1372\"\u003e#1372\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003edrop unneeded accessor (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1374\"\u003e#1374\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eConstructor cleanup (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1375\"\u003e#1375\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003efix isdetailedbalanced tol issue (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1376\"\u003e#1376\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eVersion 16 new (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1377\"\u003e#1377\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eAdd save_positions tests for ConstantRateJump and SDE+Jump systems (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1379\"\u003e#1379\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eHybrid tests remake (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1380\"\u003e#1380\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003emerge symmap_to_varmap into master (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1381\"\u003e#1381\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eAdd remake tests for hybrid problems and update JumpProcesses compat (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1382\"\u003e#1382\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eJump int promotion fix (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1383\"\u003e#1383\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003erename conversion functions (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1384\"\u003e#1384\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eExplictImports, ss_ode_model, and update HISTORY (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1385\"\u003e#1385\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eadd Poisonnians support (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1386\"\u003e#1386\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eFix spatial tests (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1387\"\u003e#1387\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eAdd \u003ca href=\"https://github.com/poissonians\"\u003e\u003ccode\u003e@​poissonians\u003c/code\u003e\u003c/a\u003e DSL option for \u003ca href=\"https://github.com/reaction\"\u003e\u003ccode\u003e@​reaction\u003c/code\u003e\u003c/a\u003e_network and \u003ca href=\"https://github.com/network\"\u003e\u003ccode\u003e@​network\u003c/code\u003e\u003c/a\u003e_component (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1388\"\u003e#1388\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eBk/improve error for non integer stoichiometry (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1389\"\u003e#1389\u003c/a\u003e) (\u003ca href=\"https://github.com/calebjubal\"\u003e\u003ccode\u003e@​calebjubal\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eOverhaul Catalyst's unit validation system (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1390\"\u003e#1390\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eDoc updates: README, Home, FAW, and API (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1391\"\u003e#1391\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eUpdate simulation doc section for v16 (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1392\"\u003e#1392\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eUpdate Catalyst Introduction doc pages (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1393\"\u003e#1393\u003c/a\u003e) (\u003ca href=\"https://github.com/TorkelE\"\u003e\u003ccode\u003e@​TorkelE\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eRemove dead deps (Requires, DynamicPolynomials), clean up extension checks (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1394\"\u003e#1394\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eFix deprecation warnings from ModelingToolkitBase (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1395\"\u003e#1395\u003c/a\u003e) (\u003ca href=\"https://github.com/ChrisRackauckas-Claude\"\u003e\u003ccode\u003e@​ChrisRackauckas-Claude\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003cli\u003eGraph array fixes and some dep cleanup (\u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1396\"\u003e#1396\u003c/a\u003e) (\u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e)\u003c/li\u003e\n\u003c/ul\u003e\n\u003c!-- raw HTML omitted --\u003e\n\u003c/blockquote\u003e\n\u003cp\u003e... (truncated)\u003c/p\u003e\n\u003c/details\u003e\n\u003cdetails\u003e\n\u003csummary\u003eChangelog\u003c/summary\u003e\n\u003cp\u003e\u003cem\u003eSourced from \u003ca href=\"https://github.com/SciML/Catalyst.jl/blob/master/HISTORY.md\"\u003eCatalyst's changelog\u003c/a\u003e.\u003c/em\u003e\u003c/p\u003e\n\u003cblockquote\u003e\n\u003ch1\u003eBreaking updates and feature summaries across releases\u003c/h1\u003e\n\u003ch2\u003eCatalyst 16.0\u003c/h2\u003e\n\u003cp\u003eCatalyst 16 is a major release that transitions from ModelingToolkit (MT) v9 to\nModelingToolkitBase (the base for ModelingToolkit v11); introduces unified\nhybrid model support for mixed ODE/SDE/Jump systems; supports user-provided\ncoupled ODEs, SDEs, jump processes, and jump-diffusions; and modernizes the\nconversion and problem-creation API.\u003c/p\u003e\n\u003cp\u003ePlease also see the \u003ca href=\"https://github.com/SciML/ModelingToolkit.jl/blob/master/NEWS.md\"\u003eModelingToolkit\nNEWS.md\u003c/a\u003e for\nall the changes that have occurred in ModelingToolkit as part of v10 and v11,\nand which are now relevant for Catalyst users.\u003c/p\u003e\n\u003ch4\u003eBREAKING: ModelingToolkitBase replaces ModelingToolkit\u003c/h4\u003e\n\u003cul\u003e\n\u003cli\u003e\n\u003cp\u003e\u003cstrong\u003eCatalyst now depends on and re-exports \u003ccode\u003eModelingToolkitBase\u003c/code\u003e instead of\n\u003ccode\u003eModelingToolkit\u003c/code\u003e.\u003c/strong\u003e This ensures Catalyst remains fully MIT-licensed after\nthe library split that occurred in ModelingToolkit v11. ModelingToolkitBase\nprovides the core symbolic system infrastructure (types, accessors, problem\nconstruction) that Catalyst needs. With this update, Catalyst moves from\nModelingToolkit v9 to ModelingToolkitBase 1.12+ (part of ModelingToolkit v11).\u003c/p\u003e\n\u003cp\u003eMost commonly used functions (\u003ccode\u003eunknowns\u003c/code\u003e, \u003ccode\u003eparameters\u003c/code\u003e, \u003ccode\u003eequations\u003c/code\u003e,\n\u003ccode\u003e@mtkcompile\u003c/code\u003e, etc.) are available through ModelingToolkitBase. However, if\nyou relied on \u003ccode\u003estructural_simplify\u003c/code\u003e, now part of \u003ccode\u003emtkcompile\u003c/code\u003e, for\nreducing models with algebraic equations, you may need to explicitly load\nModelingToolkit to obtain equivalent levels of model reduction and optimization:\u003c/p\u003e\n\u003cpre lang=\"julia\"\u003e\u003ccode\u003eusing Catalyst\nusing ModelingToolkit  # only if you need MTK-specific features not in MTKBase\n\u003c/code\u003e\u003c/pre\u003e\n\u003cp\u003eThe version of \u003ccode\u003emtkcompile\u003c/code\u003e in ModelingToolkitBase is less feature filled than\nin ModelingToolkit, but please be aware that the latter version now loads\nAGPL-licensed libraries that may impose additional restrictions on your code.\u003c/p\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003ch4\u003eBREAKING: Conversion functions renamed\u003c/h4\u003e\n\u003cul\u003e\n\u003cli\u003e\n\u003cp\u003e\u003cstrong\u003e\u003ccode\u003econvert(ODESystem, rs)\u003c/code\u003e is replaced by \u003ccode\u003eode_model(rs)\u003c/code\u003e.\u003c/strong\u003e\u003c/p\u003e\n\u003c/li\u003e\n\u003cli\u003e\n\u003cp\u003e\u003cstrong\u003e\u003ccode\u003econvert(SDESystem, rs)\u003c/code\u003e is replaced by \u003ccode\u003esde_model(rs)\u003c/code\u003e.\u003c/strong\u003e\u003c/p\u003e\n\u003c/li\u003e\n\u003cli\u003e\n\u003cp\u003e\u003cstrong\u003e\u003ccode\u003econvert(JumpSystem, rs)\u003c/code\u003e is replaced by \u003ccode\u003ejump_model(rs)\u003c/code\u003e.\u003c/strong\u003e\u003c/p\u003e\n\u003c/li\u003e\n\u003cli\u003e\n\u003cp\u003e\u003cstrong\u003e\u003ccode\u003econvert(NonlinearSystem, rs)\u003c/code\u003e is replaced by \u003ccode\u003ess_ode_model(rs)\u003c/code\u003e.\u003c/strong\u003e\u003c/p\u003e\n\u003cp\u003eThe old \u003ccode\u003eBase.convert\u003c/code\u003e methods have been removed since ModelingToolkit now has\none, unified, system type, \u003ccode\u003eSystem\u003c/code\u003e. The new functions accept the same keyword\narguments as before.\u003c/p\u003e\n\u003cp\u003e\u003cstrong\u003eBefore:\u003c/strong\u003e\u003c/p\u003e\n\u003c/li\u003e\n\u003c/ul\u003e\n\u003c!-- raw HTML omitted --\u003e\n\u003c/blockquote\u003e\n\u003cp\u003e... (truncated)\u003c/p\u003e\n\u003c/details\u003e\n\u003cdetails\u003e\n\u003csummary\u003eCommits\u003c/summary\u003e\n\u003cul\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/bdc9eee80a26afd8968305d997afa75b4e49fb08\"\u003e\u003ccode\u003ebdc9eee\u003c/code\u003e\u003c/a\u003e Update Project.toml\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/f0c375244dcc4951b05805b740cb1f984d368a2f\"\u003e\u003ccode\u003ef0c3752\u003c/code\u003e\u003c/a\u003e Bump version from 16.0.0 to 16.0.1\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/38be9ab70c340af7023eaa6bb0e8c73c7775464b\"\u003e\u003ccode\u003e38be9ab\u003c/code\u003e\u003c/a\u003e Update Project.toml\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/67ed483443723d44788ee6255cbe49471f4f58b9\"\u003e\u003ccode\u003e67ed483\u003c/code\u003e\u003c/a\u003e Update project version to 16.0.0\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/d99b3ccf2165167b88a5650a32865880ec97c548\"\u003e\u003ccode\u003ed99b3cc\u003c/code\u003e\u003c/a\u003e Merge pull request \u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1432\"\u003e#1432\u003c/a\u003e from isaacsas/readme_updates\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/cbc199a8507051498a123eb4c88b5548193e46f3\"\u003e\u003ccode\u003ecbc199a\u003c/code\u003e\u003c/a\u003e ci: revert Test.yml and TestExtensions.yml to master\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/ba4b5d9b483f8c8bf58f777c8b569fcd4889870a\"\u003e\u003ccode\u003eba4b5d9\u003c/code\u003e\u003c/a\u003e Merge pull request \u003ca href=\"https://redirect.github.com/SciML/Catalyst.jl/issues/1434\"\u003e#1434\u003c/a\u003e from isaacsas/worktree-debug-lts-bifurcation\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/9366929ce0d6a3df2d66837fa1824f56d57a7443\"\u003e\u003ccode\u003e9366929\u003c/code\u003e\u003c/a\u003e fix: use Symbolics.get_variables! in conslaw_species for Julia 1.10 compat\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/2f9fc57139a757e3635d6ccfa1ca1a4df7fafc73\"\u003e\u003ccode\u003e2f9fc57\u003c/code\u003e\u003c/a\u003e Apply suggestion from \u003ca href=\"https://github.com/isaacsas\"\u003e\u003ccode\u003e@​isaacsas\u003c/code\u003e\u003c/a\u003e\u003c/li\u003e\n\u003cli\u003e\u003ca href=\"https://github.com/SciML/Catalyst.jl/commit/2edd309342797e30379565d993376c2e121496bd\"\u003e\u003ccode\u003e2edd309\u003c/code\u003e\u003c/a\u003e debug: fix broken import and add constantdefs diagnostics for LTS\u003c/li\u003e\n\u003cli\u003eAdditional commits viewable in \u003ca href=\"https://github.com/SciML/Catalyst.jl/compare/v15.0.0...v16.0.0\"\u003ecompare view\u003c/a\u003e\u003c/li\u003e\n\u003c/ul\u003e\n\u003c/details\u003e\n\u003cbr /\u003e\n\n\nDependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`.\n\n[//]: # (dependabot-automerge-start)\n[//]: # (dependabot-automerge-end)\n\n---\n\n\u003cdetails\u003e\n\u003csummary\u003eDependabot commands and options\u003c/summary\u003e\n\u003cbr /\u003e\n\nYou can trigger Dependabot actions by commenting on this PR:\n- `@dependabot rebase` will rebase this PR\n- `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it\n- `@dependabot show \u003cdependency name\u003e ignore conditions` will show all of the ignore conditions of the specified dependency\n- `@dependabot ignore \u003cdependency name\u003e major version` will close this group update PR and stop Dependabot creating any more for the specific dependency's major version (unless you unignore this specific dependency's major version or upgrade to it yourself)\n- `@dependabot ignore \u003cdependency name\u003e minor version` will close this group update PR and stop Dependabot creating any more for the specific dependency's minor version (unless you unignore this specific dependency's minor version or upgrade to it yourself)\n- `@dependabot ignore \u003cdependency name\u003e` will close this group update PR and stop Dependabot creating any more for the specific dependency (unless you unignore this specific dependency or upgrade to it yourself)\n- `@dependabot unignore \u003cdependency name\u003e` will remove all of the ignore conditions of the specified dependency\n- `@dependabot unignore \u003cdependency name\u003e \u003cignore condition\u003e` will remove the ignore condition of the specified dependency and ignore conditions\n\n\n\u003c/details\u003e","html_url":"https://github.com/SciML/FiniteStateProjection.jl/pull/39","url":"https://dependabot.ecosyste.ms/api/v1/hosts/GitHub/repositories/SciML%2FFiniteStateProjection.jl/issues/39","packages_url":"https://dependabot.ecosyste.ms/api/v1/issues/39/packages"}}]}